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Hybrid hidden Markov model for marine environment monitoring ArchiMer
Rousseeuw, Kevin; Poison Caillault, Emilie; Lefebvre, Alain; Hamad, Denis.
Phytoplankton is an important indicator of water quality assessment. To understand phytoplankton dynamics, many fixed buoys and ferry boxes were implemented, resulting in the generation of substantial data signals. Collected data are used as inputs of an effective monitoring system. The system, based on unsupervised hidden Markov model (HMM), is designed not only to detect phytoplancton blooms but also to understand their dynamics. HMM parameters are usually estimated by an iterative expectation-maximization (EM) approach. We propose to estimate HMM parameters by using spectral clustering algorithm. The monitoring system is assessed based on database signals from MAREL-Carnot station, Boulogne-sur-Mer, France. Experimental results show that the proposed...
Tipo: Text Palavras-chave: Hybrid Hidden Markov Model; Marine water monitoring; Phytoplankton blooms; Spectral clustering.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00255/36643/35225.pdf
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Utilisation conjointe de FlowCAM / ZooPhytoImage et de la cytométrie en flux. Premiers résultats et perspectives. Action 9. FlowCam ZooPhytoImage. Livrable n° 4. Rapport final, 23 septembre 2014 ArchiMer
Ali, Nour; Wacquet, Guillaume; Didry, Morgane; Hamad, Denis; Artigas, Luis Felipe; Grosjean, Philippe.
The goal of this study is to investigate about the possibility of coupling measurements made by image analysis from the FlowCAM with Zoo/PhytoImage with data obtained with a flux cytometer (pulse-shape-recording Scanning Flow Cytometry) on the same samples gathered in current monitoring networks in the eastern Channel and southern North Sea. In this preliminary study, we collected a series of samples off Boulogne-sur-Mer (SRN-REPHY monitoring system run by IFREMER) and along a transect in the Baie St-Jean (Wimereux-Slack) run by LOG. All these samples were digitized with a FlowCAM and measured with a scanning flow cytometer (CytoSense). The complete analysis with the FlowCAM and Zoo/PhytoImage is detailed in the present report. In order to get a better...
Tipo: Text Palavras-chave: Manche – Mer du Nord; Phytoplancton; Analyse d'image; Classification supervisée; Cytométrie en flux; Eastern English Channel and southern North Sea; Phytoplankton; Image analysis; Machine learning; Scanning Flow Cytometry.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00363/47442/47470.pdf
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Version évolutive de l’outil opérationnel de numérisation et d’analyse semi-automatique d’images de phytoplancton, utilisant le matériel FlowCAM et le logiciel ZooPhytoImage. Nouvelles perspectives ArchiMer
Wacquet, Guillaume; Grosjean, Philippe; Colas, Florent; Hamad, Denis; Artigas, Luis Felipe.
The coupled system FlowCAM/ZooPhytoImage has become a real operational tool in 2014. However, to be fully adapted to the observations of phytoplankton performed in the context of the REPHY observation network and in order to better respond to present and future requests concerning the evaluation of quality of coastal and marine waters within the European requirements, such as the WFD and MSFD, new functionalities must be integrated into existing tools. Therefore, different axis of development have been proposed by UMONS and Ifremer to adapt both the digitization device and the Zoo/PhytoImage software to the constraints defined by the REPHY. First, version 5 of Zoo/PhytoImage contains recent innovations such as the development of routines to automatically...
Tipo: Text Palavras-chave: Plancton; Analyse automatisée; Analyse d'image; Classification supervisée; Apprentissage actif; Dénombrement de cellules; Plankton; Automated analysis; Image processing; Supervised classification; Active learning; Cells counting.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00389/49986/50573.pdf
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